Run growth calculations

Usage

run_growth_calculations(
  qsip_data_object,
  N_total_it,
  growth_model = "exponential",
  timepoint = "timepoint",
  correct_copy_numbers = "filter",
  correct_EAF = "filter"
)

Arguments

qsip_data_object: (qsip_data) An object of qsip_data class
N_total_it: (data.frame) A data frame of time zero totals from get_N_total_it()
growth_model: (character, default: exponential) The growth model to use. Must be either "exponential" or "linear"
timepoint: (character) The name of the timepoint column in the source data
correct_copy_numbers: (character, default: filter) If copy numbers are not logical (e.g. < 0), should they be filtered out or adjusted to 0?
correct_EAF: (character, default: filter) If EAF values are not logical (e.g. <0 or >1), should they be filtered out or adjusted to 0 or 1?