This is the last main workhorse function in qSIP analysis and generates the important
values (Z, G, M, M_labeledmax, M_labeled and EAF) for the observed data as well
as for all of the resampled data.
Usage
run_EAF_calculations(qsip_data_object, gc_method = "MM", propO = 1)
Arguments
- qsip_data_object
(qsip_data) A qsip_data_object with resample information
- gc_method
(string) The method to use for calculating the GC content from WAD
- propO
(numeric) The proportion of heavy isotope in the labeled DNA. Only used for 18O.
Value
Returns an updated qsip_data_object with final EAF and other values
in the @EAF slot.
