Plot the results of filtering features

After running the run_feature_filter() code, this function will produce two plot detailing the consequences of the filtering. Plot A shows the retained and removed features by their total tube relative abundance contribution, and plot B shows the retained and removed features by the total count of each category. The "zero fractions" shown in plot B are those entirely missing from the given source_mat_id and are thus not going to be retained no matter what the run_filter_feature() parameters are.

Usage

plot_filter_results(
  qsip_data_object,
  return_type = "combined",
  colors = lifecycle::deprecated()
)

Arguments

qsip_data_object

(qsip_data)

return_type

(string, default: combined) Changes the return type from a combined plot (combined), list of individual plots (individual) or list of dataframes (dataframe)

Value

Combined or individual plots, or the raw dataframes

See also

Other "visualizations": plot_density_outliers(), plot_feature_curves(), plot_sample_curves(), plot_source_wads()