Plot occurrence of features in samples — plot_feature

This is a plotting function to visualize the occurrence of features in samples. The function takes a qsip_data object and a vector of feature_ids, and can scale the results by total abundance or source abundance, and the WAD value can also be shown.

Usage

plot_feature_occurrence(
  qsip_data_object,
  feature_ids = NULL,
  scale = "none",
  show_wad = FALSE,
  title = NULL,
  legend.position = "right"
)

Arguments

qsip_data_object: (qsip_data) A qsip_data object
feature_ids: (character) An optional vector of feature_ids
scale: (character) A character string
show_wad: (logical) A logical value
title: (character) A character string
legend.position: (character or numeric vector) Values passed to ggplot2::theme(legend.position = ...)

Value

Returns a ggplot object