Permanova (adonis) and visualization
Usage
permanova(phyloObject, group = "TYPE", metric = "jsd", ordPoints = "none")
Arguments
- phyloObject
A phyloseq object
- group
A column name from the phyloseq object sample data to group samples for comparison
- metric
The distance metric to use
- ordPoints
X,Y points to use. If none given, then an NMDS will be run
- palettePick
A palette object if you don't want to use the default