getPhyloPalette

Usage

get_phylo_palette(
  p,
  n = 10,
  palette_high = colorbook$helpcenter,
  palette_low = colorbook$inslife,
  random_high = FALSE,
  random_low = FALSE,
  other_color = "#555555",
  OTU = F
)

Arguments

p: A Phyloseq object
n: Max number of taxa to be included in the "primary" palette, with the rest in a secondary, less dramatic palette
palette_high: Expanding color palette for the high taxa
palette_low: Expanding color palette for the low taxa
random_high: If TRUE, randomize the color palette. If FALSE, colors will be arranged from high to low taxa abundance
random_low: If TRUE, randomize the color palette. If FALSE, colors will be arranged from high to low taxa abundance
other_color: Color to use for the aggregated Other taxa