Phylogenetic Diversity Measures
Usage
get_phylo_diversity(p, runs = 999, null.model = "frequency", minOccurrence = 1)
Arguments
- p
A phyloseq object
- runs
Number of bootstraps to run
- null.model
The null.model for the SES calculations
- minOccurrence
Species must be found at least this many times in at least one sample to be kept